BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002G04LP1|AL425013
(833 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1461 531 e-150
3x_Contig1530 259 6e-69
>3x_Contig1461
Length = 5478
Score = 531 bits (256), Expect = e-150
Identities = 414/474 (87%), Gaps = 10/474 (2%)
Strand = Plus / Minus
Query: 347 aacctactaaatagggatrccggcacywgccggtygactctactaagagcggactatgcg 406
|||||||||||||||| | | ||||| |||||| |||||| || |||| ||||||| ||
Sbjct: 703 aacctactaaatagggttgctggcacttgccggttgactcttcttagagaggactat-cg 645
Query: 407 gtttcaag-ccgaag-gaagwawsaggcaataacargtctstaatgcccttaracgtact 464
|||||||| |||| | |||| ||||||||||| |||| | ||||||||| |||| ||
Sbjct: 644 gtttcaagaccgatgagaagtttgaggcaataacaggtctgtgatgcccttagacgttct 585
Query: 465 ggcgccgcacgcgcgcaacacygacggagccagcgagkacaaccttggccgagagggctg 524
|| ||||||||| ||| || ||||||||||||||| |||||||||||||||||| |||
Sbjct: 584 gg-gccgcacgcacgctactgtgacggagccagcgagtacaaccttggccgagaggtctg 526
Query: 525 ggtaawcttgtraaacwccgtgcgtgctggggatagcagcattgtmattattgckcttca 584
||||| ||||| |||| |||| |||||||||||||| |||||||| |||||||| |||||
Sbjct: 525 ggtaatcttgtgaaactccgt-cgtgctggggatag-agcattgtaattattgctcttca 468
Query: 585 acgaggaaytccyagtaagcscaaskcatcagctkgcgtagattacgtgcctgccctttg 644
|||||||| ||| ||||||| ||| |||||||| |||| |||||||| |||||||||||
Sbjct: 467 acgaggaattcctagtaagcgcaagtcatcagcttgcgttgattacgtccctgccctttg 408
Query: 645 trcacaccgcccgtmgckagtaccgattgaatrgcttagtgargcctcaggattygctta 704
| |||||||||||| || |||||||||||||| ||||||||| ||||||||||| |||||
Sbjct: 407 tacacaccgcccgtcgctagtaccgattgaatggcttagtgaggcctcaggatttgctta 348
Query: 705 gagaagggggcaackccatctcagagcgaagaatcyggtcaaac-ttggtcatttgagag 763
| |||||||||||| |||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct: 347 gggaagggggcaactccatctcagagcgaagaatctggtcaaacattggtcattt-agag 289
Query: 764 gaactaaaagtcgtgacaaggtgtccgtagtgaaacctgcggaaggatcattaa 817
|||||||||||||| ||||||| ||||||||| ||||||||| |||||||||||
Sbjct: 288 gaactaaaagtcgtaacaaggtttccgtagtg-aacctgcgg-aggatcattaa 237
Score = 178 bits (86), Expect = 1e-44
Identities = 175/206 (84%), Gaps = 7/206 (3%)
Strand = Plus / Minus
Query: 25 tagggatcgggtggtgtttttcttatgaccctacacggcacactgacgagaratcgaaag 84
||||||||||||||||||||||||||||||| || |||||| || |||||| ||| ||||
Sbjct: 1001 tagggatcgggtggtgtttttcttatgaccc-actcggcac-cttacgagaaatc-aaag 945
Query: 85 tcttctggcgwccaggggggagwawggwcgcaaggcwgaracwwaaaggaawtsacggaa 144
|||| ||| | | |||||||| | || |||||||| || || ||||||| | ||||||
Sbjct: 944 tctt-tgg-gttctggggggagtatggtcgcaaggctgaaacttaaaggaattgacggaa 887
Query: 145 rggcaccaccaggagtggagccagcgcgcyctaatwwgactcaacacggggaaacacacc 204
||||||||||||||||||||| ||| || |||| |||||||||||||||||| ||||
Sbjct: 886 gggcaccaccaggagtggagcctgcg-gct-taatttgactcaacacggggaaactcacc 829
Query: 205 aggacmagacacaaaaaggattgaca 230
||| | |||||||| |||||||||||
Sbjct: 828 aggtccagacacaataaggattgaca 803
>3x_Contig1530
Length = 6216
Score = 259 bits (125), Expect = 6e-69
Identities = 224/263 (85%), Gaps = 2/263 (0%)
Strand = Plus / Plus
Query: 562 agcattgtmattattgckcttcaacgaggaaytccyagtaagcscaaskcatcagctkgc 621
|||||||| |||||||| ||||||||||||| ||| ||||||| ||| |||||||| ||
Sbjct: 1186 agcattgtaattattgctcttcaacgaggaattcctagtaagcgcaattcatcagcttgc 1245
Query: 622 gtagattacgtgcctgccctttgtrcacaccgcccgtmgckagtaccgattgaatrgctt 681
| ||||| | ||| |||||| | |||||||||| | || | |||| ||| ||| ||||
Sbjct: 1246 ttttattacttcccttccctttttacacaccgcccttcgctattacctatttaatcgctt 1305
Query: 682 agtgargcctcaggattygcttagagaagggggcaackccatctcagagcgaagaatcyg 741
| ||| |||||| ||| ||||||||||||||||||| ||||||||||||||| |||| |
Sbjct: 1306 attgacgcctcactatttgcttagagaagggggcaactccatctcagagcgaaaaatctg 1365
Query: 742 gtcaaacttggtcatttgagaggaactaaaagtcgtgacaaggtgtccgtagtgaaacct 801
||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||| |||||
Sbjct: 1366 gtcaaacttggtcattt-agaggaactaaaattcgtaacaaggtttccgtagtg-aacct 1423
Query: 802 gcggaaggatcattaaagattat 824
|||||| ||||||||| |||||
Sbjct: 1424 gcggaactatcattaaatattat 1446
Score = 151 bits (73), Expect = 2e-36
Identities = 169/201 (84%), Gaps = 8/201 (3%)
Strand = Plus / Plus
Query: 31 tcgggtggtgtttttcttatgaccctacacggcacactgacgagaratcgaaagtcttct 90
||||||||||||||||||||||||| || |||||| || |||||| ||| |||||||| |
Sbjct: 683 tcgggtggtgtttttcttatgaccc-actcggcac-cttacgagaaatc-aaagtctt-t 738
Query: 91 ggcgwccaggggggagwawggwcgcaaggcwgara-cwwaaaggaawtsacggaarggca 149
|| | | |||||||| | || |||||||| || | | ||||||| | |||||| ||||
Sbjct: 739 gg-gttctggggggagtatggtcgcaaggctgaaaacttaaaggaattgacggaagggca 797
Query: 150 ccaccaggagtggagccagcgcgcyctaatwwgactcaacacggggaaacacaccaggac 209
||||||||||||||||| ||| || |||| |||||||||||||||||| ||||||| |
Sbjct: 798 ccaccaggagtggagcctgcg-gct-taatttgactcaacacggggaaactcaccaggtc 855
Query: 210 magacacaaaaaggattgaca 230
|||||||| |||||||||||
Sbjct: 856 cagacacaataaggattgaca 876
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.44 0.720 1.36
Gapped
Lambda K H
1.44 0.720 1.36
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1602
Number of Sequences: 1807
Number of extensions: 1602
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 2
length of query: 833
length of database: 10,358,551
effective HSP length: 16
effective length of query: 817
effective length of database: 10,329,639
effective search space: 8439315063
effective search space used: 8439315063
T: 0
A: 40
X1: 5 (10.4 bits)
X2: 14 (29.0 bits)
S1: 11 (23.3 bits)
S2: 48 (100.0 bits)